My teamspeak server is running just fine but GT shows it as dead. Nothing has changed at all the ip's and query ports are all the same.

If you are referring to the one if your favorites please add back the scanning permissions http://www.gametracker.com/games/ts3/forum.php?thread=42258

All the permissions are set as they should be.

I apologize for not making the implication of my post clear enough. The reason for me being so specific in what you need to do is because I tested it myself and found they are NOT.

Evidence:

TS3
Welcome to the TeamSpeak 3 ServerQuery interface, type "help" for a list of comm
ands and "help <command>" for information on a specific command.
use port=9987
error id=0 msg=ok
serverinfo
error id=2568 msg=insufficient\sclient\spermissions failed_permid=23
clientlist
error id=2568 msg=insufficient\sclient\spermissions failed_permid=27
channellist
error id=2568 msg=insufficient\sclient\spermissions failed_permid=25

I Appreciate the response. I am truly at a loss as the settings as far as I can tell are identical to the ones in the guide you linked me too. I will try again though I am sure that nothing has changed.
As you can see though below They seem to be right.

Ensure that you have them set for the Guest group.

Those are from the guest group.

Bump

If you actually set them for the default guest group then that is all you need to do. If it is not working please try asking at the teamspeak forums. They should be able to help you figure out what you may have done to the server to make it not work right.